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Tool permissions are switches that decide whether the agent can change or delete files in the workspace (the isolated file environment of your agent). Settings → Tool permissions

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Available permissions

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Recommendations

If the agent shouldn’t change files autonomously — turn off «Allow file changes». The agent will propose edits, but only you apply them.
  • Enable file deletion only when the agent must do it explicitly (e.g. cleaning temp files on schedule)
  • For agents that only read and answer — both can stay off